 |
Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
XP_009785856.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
Family |
GRAS |
Protein Properties |
Length: 441aa MW: 50420.2 Da PI: 5.2764 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009785856.1 | genome | NCBI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 324.2 | 2.7e-99 | 57 | 430 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97
+lL ecA+a+s++d +++++lL+ l+elasp+gd +q+la+yf++AL + ++++ ++yk+l++ ++++k+ +++ + f+evsP+ +f+h++
XP_009785856.1 57 RLLRECATAISEKDSTKIHHLLWMLNELASPYGDCNQKLAFYFLQALFCKATDTGLRCYKTLTSAAEKSKSFDSSRKLILKFQEVSPWTTFGHVA 151
7899**********************************************************9999987666666566666************** PP
GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.vakrledlel 191
N aIlea++ge+++HiiD++ + ++QWp+Ll+aLa+R++++p+l++T+v+ +++ k ++e+++r++kfA+ +gvpfefnv+ ++l++l+
XP_009785856.1 152 SNGAILEALDGESKLHIIDISHTFCTQWPTLLEALATRNDETPHLKLTVVVTESTLVKSVMKEVAQRMEKFARLMGVPFEFNVIgGLNNLKELTK 246
****************************************************9999***************************97788******* PP
GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleaklpreseerik 284
e+L++k++Ea+aVn++ +l ++ +e+ r +v+++++sl+Pkvv++ve+ead ++++F++ f e+l++y+ f++l++++p +s+er +
XP_009785856.1 247 ESLNIKEEEAVAVNCIGALRKVE-----VEE-RGDVIRILQSLNPKVVTIVEHEADFscTRNDFVKCFEECLRFYTLYFEMLDESFPITSNERLV 335
********************997.....444.889*******************98766899********************************* PP
GRAS 285 vErellgreivnvvace...gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.....eesgslvlgWkdrpLvsvS 371
+Ere +++iv+v+ac g+ e +e+ ++W+erl+e F+p pl+++a++++++ll+++k g+++ +es ++l+W+d+p+v++S
XP_009785856.1 336 IERE-CSKSIVKVLACDdqiGDGDGETRERGNQWSERLREL-FSPFPLNDDAVDDVRSLLKRYK-AGWSLVlpqenQESPGIYLTWRDEPVVWAS 427
****.89*********83334457899999*********98.**********************.666665556556688899************ PP
GRAS 372 aWr 374
aW+
XP_009785856.1 428 AWK 430
**8 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 441 aa
Download sequence Send
to blast |
MEKSLFFSKP TNNFLVTNYV HHLINMQNPN QQPHENSSRS QSPENGDPVS DAKWASRLLR 60 ECATAISEKD STKIHHLLWM LNELASPYGD CNQKLAFYFL QALFCKATDT GLRCYKTLTS 120 AAEKSKSFDS SRKLILKFQE VSPWTTFGHV ASNGAILEAL DGESKLHIID ISHTFCTQWP 180 TLLEALATRN DETPHLKLTV VVTESTLVKS VMKEVAQRME KFARLMGVPF EFNVIGGLNN 240 LKELTKESLN IKEEEAVAVN CIGALRKVEV EERGDVIRIL QSLNPKVVTI VEHEADFSCT 300 RNDFVKCFEE CLRFYTLYFE MLDESFPITS NERLVIEREC SKSIVKVLAC DDQIGDGDGE 360 TRERGNQWSE RLRELFSPFP LNDDAVDDVR SLLKRYKAGW SLVLPQENQE SPGIYLTWRD 420 EPVVWASAWK PQEKSMERYD Q
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AP010785 | 0.0 | AP010785.1 Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0040B24, complete sequence. |
GenBank | HG975520 | 0.0 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |