PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009785856.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 441aa    MW: 50420.2 Da    PI: 5.2764
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009785856.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS324.22.7e-99574303374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     +lL ecA+a+s++d +++++lL+ l+elasp+gd +q+la+yf++AL  + ++++ ++yk+l++ ++++k+ +++ +    f+evsP+ +f+h++
  XP_009785856.1  57 RLLRECATAISEKDSTKIHHLLWMLNELASPYGDCNQKLAFYFLQALFCKATDTGLRCYKTLTSAAEKSKSFDSSRKLILKFQEVSPWTTFGHVA 151
                     7899**********************************************************9999987666666566666************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.vakrledlel 191
                      N aIlea++ge+++HiiD++ + ++QWp+Ll+aLa+R++++p+l++T+v+ +++  k  ++e+++r++kfA+ +gvpfefnv+   ++l++l+ 
  XP_009785856.1 152 SNGAILEALDGESKLHIIDISHTFCTQWPTLLEALATRNDETPHLKLTVVVTESTLVKSVMKEVAQRMEKFARLMGVPFEFNVIgGLNNLKELTK 246
                     ****************************************************9999***************************97788******* PP

            GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleaklpreseerik 284
                     e+L++k++Ea+aVn++ +l ++      +e+ r +v+++++sl+Pkvv++ve+ead   ++++F++ f e+l++y+  f++l++++p +s+er +
  XP_009785856.1 247 ESLNIKEEEAVAVNCIGALRKVE-----VEE-RGDVIRILQSLNPKVVTIVEHEADFscTRNDFVKCFEECLRFYTLYFEMLDESFPITSNERLV 335
                     ********************997.....444.889*******************98766899********************************* PP

            GRAS 285 vErellgreivnvvace...gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.....eesgslvlgWkdrpLvsvS 371
                     +Ere  +++iv+v+ac    g+   e +e+ ++W+erl+e  F+p pl+++a++++++ll+++k  g+++      +es  ++l+W+d+p+v++S
  XP_009785856.1 336 IERE-CSKSIVKVLACDdqiGDGDGETRERGNQWSERLREL-FSPFPLNDDAVDDVRSLLKRYK-AGWSLVlpqenQESPGIYLTWRDEPVVWAS 427
                     ****.89*********83334457899999*********98.**********************.666665556556688899************ PP

            GRAS 372 aWr 374
                     aW+
  XP_009785856.1 428 AWK 430
                     **8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.19329406IPR005202Transcription factor GRAS
PfamPF035149.3E-9757430IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MEKSLFFSKP TNNFLVTNYV HHLINMQNPN QQPHENSSRS QSPENGDPVS DAKWASRLLR  60
ECATAISEKD STKIHHLLWM LNELASPYGD CNQKLAFYFL QALFCKATDT GLRCYKTLTS  120
AAEKSKSFDS SRKLILKFQE VSPWTTFGHV ASNGAILEAL DGESKLHIID ISHTFCTQWP  180
TLLEALATRN DETPHLKLTV VVTESTLVKS VMKEVAQRME KFARLMGVPF EFNVIGGLNN  240
LKELTKESLN IKEEEAVAVN CIGALRKVEV EERGDVIRIL QSLNPKVVTI VEHEADFSCT  300
RNDFVKCFEE CLRFYTLYFE MLDESFPITS NERLVIEREC SKSIVKVLAC DDQIGDGDGE  360
TRERGNQWSE RLRELFSPFP LNDDAVDDVR SLLKRYKAGW SLVLPQENQE SPGIYLTWRD  420
EPVVWASAWK PQEKSMERYD Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-338543033375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0107850.0AP010785.1 Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0040B24, complete sequence.
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009785856.10.0PREDICTED: protein SHORT-ROOT-like
SwissprotQ9SZF71e-142SHR_ARATH; Protein SHORT-ROOT
TrEMBLM1B6260.0M1B626_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000378840.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20312464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-143GRAS family protein